PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4U28891.10

Common Name

JCGZ_22555, LOC105646109

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 40aa MW: 4669.51 Da PI: 9.9665

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4U28891.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	55.9	9.4e-18	2	31	26	55
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPk +l+lm+v++Lt++hvkSHLQkYR+ Jcr4U28891.10 2 EATPKGVLKLMNVESLTIYHVKSHLQKYRI 31 69***************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01557	1.2E-12	2	32	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	4.2E-16	2	32	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-8	3	31	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 40 aa Download sequence Send to blast
VEATPKGVLK LMNVESLTIY HVKSHLQKYR IAKYLPENKE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087265.1	2e-18	PREDICTED: protein PHR1-LIKE 1
Refseq	XP_012087266.1	2e-18	PREDICTED: protein PHR1-LIKE 1
Refseq	XP_012087267.1	2e-18	PREDICTED: protein PHR1-LIKE 1
Refseq	XP_012087268.1	2e-18	PREDICTED: protein PHR1-LIKE 1
TrEMBL	A0A067JYD5	2e-18	A0A067JYD5_JATCU; Uncharacterized protein
STRING	GSMUA_Achr10P23260_001	7e-16	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-17	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	105646109

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]